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sentieon's proprietary algorithms for variant calling  (Sentieon Inc)

 
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    Structured Review

    Sentieon Inc sentieon's proprietary algorithms for variant calling
    Sentieon's Proprietary Algorithms For Variant Calling, supplied by Sentieon Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/variant+calling+algorithm/sentieon+s+proprietary+algorithms+for+variant+calling/pmc07120354-118-12-8
    Average 90 stars, based on 1 article reviews
    sentieon's proprietary algorithms for variant calling - by Bioz Stars, 2026-11
    90/100 stars

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    Related Articles

    Variant Assay:

    Article Title: Evidence for SARS-CoV-2 Delta and Omicron co-infections and recombination.
    Article Snippet: .. Reads are then marked for duplicates before proceeding to variant calling using the Haplotyper algorithm (Sentieon, Inc). ..

    Article Title: Genomic exploration of the endangered oriental stork, Ciconia boyciana , sheds light on migration adaptation and future conservation
    Article Snippet: Variant calling was performed using DNAseq Haplotyper in Sentieon (v202010.01) [ ]. .. Bam files and genomic variant call format (gVCF) files were generated for each individual, and joint calling was conducted using GVCFtyper algorithm in the Sentieon DNAseq pipeline to generate a combined VCF file covering all individuals. ..

    Article Title: Pilot work of the 10K Chinese People Genomic Diversity Project along the Silk Road suggests a complex east-west admixture landscape and biological adaptations.
    Article Snippet: 1Institute of Rare Diseases, West China Hospital of Sichuan University, Sichuan University, Chengdu 610000, China 2Center for Archaeological Science, Sichuan University, Chengdu 610000, China 3Anti-Drug Technology Center of Guangdong Province, Guangzhou 510220, China 4Belt and Road Research Center for Forensic Molecular Anthropology, Gansu University of Political Science and Law, Lanzhou 730000, China 5School of Basic Medicine and Forensic Medicine, North Sichuan Medical College, Nanchong 637007, China 6Center for Genetics and Prenatal Diagnosis, Affiliated Hospital of North Sichuan Medical College, Nanchong 637007, China 7Institution of Genome Medicine, Affiliated Hospital of North Sichuan Medical College, Nanchong 637007, China 8Department of Forensic Medicine, College of Basic Medicine, Chongqing Medical University, Chongqing 400331, China 9School of Forensic Medicine, Shanxi Medical University, Jinzhong 030001, China 10School of Forensic Medicine, Kunming Medical University, Kunming 650500, China 11West China School of Basic Science & Forensic Medicine, Sichuan University, Chengdu 610041, China 12Department of Public Health, Chengdu Medical College, Chengdu 610500, China 13State Key Laboratory of Cellular Stress Biology, School of Life Sciences, Xiamen University, Xiamen 361005, China 14Institute of Forensic Science, Ministry of Public Security, Beijing 100038, China

    Article Title: XBB.1.5 mRNA COVID-19 vaccine protection against inpatient or emergency department visits among adults infected with SARS-CoV-2 JN.1 and XBB-lineage variants
    Article Snippet: .. SARS-CoV-2 aligned reads were then marked for duplicates followed by variant calling using the Haplotyper algorithm (Sentieon, Inc). ..

    Generated:

    Article Title: Genomic exploration of the endangered oriental stork, Ciconia boyciana , sheds light on migration adaptation and future conservation
    Article Snippet: Variant calling was performed using DNAseq Haplotyper in Sentieon (v202010.01) [ ]. .. Bam files and genomic variant call format (gVCF) files were generated for each individual, and joint calling was conducted using GVCFtyper algorithm in the Sentieon DNAseq pipeline to generate a combined VCF file covering all individuals. ..



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    Image Search Results


    Main characteristics of the studies included in the present systematic review.

    Journal: Diagnostics

    Article Title: The Need for Standardization in Next-Generation Sequencing Studies for Classic Hodgkin Lymphoma: A Systematic Review

    doi: 10.3390/diagnostics12040963

    Figure Lengend Snippet: Main characteristics of the studies included in the present systematic review.

    Article Snippet: ctDNA as a feasible strategy for genotyping and monitoring , Variants in SOCS1 (28%), IGLL5 (36%), TNFAIP3 (23%), GNA13 (23%) and STAT6 (21%). Poor prognosis features correlated with ctDNA concentration , VarScan2 and DGCaller algorithms for variant calling. RefSeq database for functional annotation , Illumina, San Diego, CA, USA , ctDNA , 60 cases of newly diagnosed cHL , Identify cHL somatic variants , Alcoceba et al., (2021) [ ] .

    Techniques: Sequencing, Software, Concentration Assay, Variant Assay, Functional Assay, Control, Biomarker Discovery, Isolation, Selection